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Download for expression and functional state profiles

Database ID Dataset Name Cancer Type No. Cells Source Accession Expression Profile State Score
EXP0001 Chen W. Genome Biol. 2018 (Rh41) Alveolar rhabdomyosarcoma 6875 Cell Line: Rh41 GSE113660 PCG, lncRNA
EXP0002 Yukie Kashima. Scientific Report. 2018 (H1650) Bronchoalveolar carcinoma 96 Cell Line: H1650 DRP003981 PCG, lncRNA
EXP0003 Booth CAG.2018.Cancer Cell (ALL Cell Lines) Acute lymphoblastic leukemia 24 Cell Line: LOUCY/JURKAT GSE100694 PCG, lncRNA
EXP0004 Klein AM. Cell. 2015 (K562) Chronic myelogenous leukemia 1192 Cell Line: K562 GSE65525 PCG
EXP0005 Attar M. Sci Rep. 2018 (K562) Chronic myelogenous leukemia 267 Cell Line: K562 GSE98734 PCG, lncRNA
EXP0006 Giustacchini A. Nat Med. 2017 (K562) Chronic myelogenous leukemia 91 Cell Line: K562 GSE76312 PCG, lncRNA
EXP0007 Kind J. Cell. 2015 (KBM7) Chronic myelogenous leukemia 81 Cell Line: KBM7 GSE68596 PCG
EXP0008 Guillaumet-Adkins A. Genome Biol. 2017 (K562) Chronic myelogenous leukemia 81 Cell Line: K562 GSE85534 PCG
EXP0009 Li H. Nat Genet. 2017 (K562) Chronic myelogenous leukemia 73 Cell Line: K562 GSE81861 PCG, lncRNA
EXP0010 Aarts M. Genes Dev. 2017 (K562) Chronic myelogenous leukemia 50 Cell Line: K562 GSE94979 PCG, lncRNA
EXP0011 Wu AR. Nat Methods. 2014 (HCT-116) Colorectal cancer 99 Cell Line: HCT-116 GSE51254 PCG, lncRNA
EXP0012 Li H. Nat Genet. 2017 (HCT-116) Colorectal cancer 51 Cell Line: HCT-116 GSE81861 PCG, lncRNA
EXP0013 Arindam Banerjee. Oncotarget. 2018 (MDA-MB-231 ) Breast cancer 617 Cell Line: MDA-MB-231 GSE106202 PCG
EXP0014 Hafner M.Nat Methods.2016 (BRCA Cell Lines) Breast cancer 87 Cell Line: BT20/MCF-10A /SKBR3 GSE80297 PCG
EXP0015 Yeakley JM. PLoS One. 2017 (MCF-7) Breast cancer 45 Cell Line: MCF-7 GSE91395 PCG, lncRNA
EXP0016 Yeakley JM. PLoS One. 2017 (MDA-MB-231) Breast cancer 33 Cell Line: MDA-MB-231 GSE91395 PCG, lncRNA
EXP0017 Aaron TL Lun. Nucleic Acids Res. 2018 (Hela) Cervix cancer 126 Cell Line: Hela ERP020478 PCG, lncRNA
EXP0018 Hennig BP. G3 (Bethesda). 2018 (Hela) Cervix cancer 42 Cell Line: Hela GSE101519 PCG
EXP0019 Patel AP. Science. 2014 (GBM Cell Lines) Glioblastoma 177 Cell Line: GSC/DGC GSE57872 PCG, lncRNA
EXP0020 Bose S.Genome Biol.2015 (U-87) Glioblastoma 39 Cell Line: U-87 GSE66357 PCG
EXP0021 Filbin MG.Science. 2018 (Cell Culture) Glioma 696 Cell Line: Cell culture GSE102130 PCG
EXP0022 Boeva V. Nat Genet 2017 (Cell Line) Neuroblastoma 36 Cell Line: Neuroblastoma cell line GSE90683 PCG, lncRNA
EXP0023 Ling Yang. 2018 (KYSE-180 ) Esophageal squamous cell carcinoma 314 Cell Line: KYSE-180 GSE81812 PCG, lncRNA
EXP0024 Zheng H. Hepatology. 2018 (HuH-7) Hepatocellular carcinoma 55 Cell Line: HuH-7 GSE103866 PCG, lncRNA
EXP0025 Zheng H. Hepatology. 2018 (HuH-1) Hepatocellular carcinoma 43 Cell Line: HuH-1 GSE103866 PCG, lncRNA
EXP0026 Suzuki A. Genome Biol. 2015 (LC-2/ad) Lung adenocarcinoma 245 Cell Line: LC-2/ad DRP001358 PCG, lncRNA
EXP0027 Tsukasa Kouno.biorxiv. 2018 (A549) Lung adenocarcinoma 218 Cell Line: A549 DRP003337 PCG, lncRNA
EXP0028 Yukie Kashima. Scientific Report. 2018 (II18) Lung adenocarcinoma 96 Cell Line: II18 DRP003981 PCG, lncRNA
EXP0029 Li H. Nat Genet. 2017 (A594) Lung adenocarcinoma 74 Cell Line: A549 GSE81861 PCG, lncRNA
EXP0030 Kim KT. Genome Biol. 2015 (H358) Lung adenocarcinoma 50 Cell Line: H358 GSE69405 PCG, lncRNA
EXP0031 Suzuki A. Genome Biol. 2015 (PC-9) Lung adenocarcinoma 46 Cell Line: PC-9 DRP001358 PCG, lncRNA
EXP0032 Suzuki A. Genome Biol. 2015 (VMRC-LCD) Lung adenocarcinoma 46 Cell Line: VMRC-LCD DRP001358 PCG, lncRNA
EXP0033 Yukie Kashima. Scientific Report. 2018 (PC-9) Non-small cell lung cancer 164 Cell Line: PC-9 DRP003981 PCG, lncRNA
EXP0034 Yukie Kashima. Scientific Report. 2018 (H1975) Non-small cell lung cancer 96 Cell Line: H1975 DRP003981 PCG, lncRNA
EXP0035 Yukie Kashima. Scientific Report. 2018 (H2228) Non-small cell lung cancer 96 Cell Line: H2228 DRP003981 PCG, lncRNA
EXP0036 Li H. Nat Genet. 2017 (H1437) Non-small cell lung cancer 47 Cell Line: H1437 GSE81861 PCG, lncRNA
EXP0037 Shah F. Mol Oncol. 2017 (Cell Line) Pancreatic ductal adenocarcinoma 96 Cell Line: Pancreatic ductal adenocarcinoma cell lines GSE99305 PCG, lncRNA
EXP0038 Horning AM. Cancer Res. 2018 (LNCaP) Prostate cancer 144 Cell Line: LNCaP GSE99795 PCG, lncRNA
EXP0039 Miyamoto DT. Science. 2015 (Cell Lines) Prostate cancer 30 Cell Line: DU145/LNCaP/PC3/VCaP GSE67980 PCG
EXP0040 Torre EA. Cell Syst. 2018 (WM989) Melanoma 575 Cell Line: WM989 GSE99330 PCG, lncRNA
EXP0041 Shaffer SM. Nature. 2017 (WM983B) Melanoma 86 Cell Line: WM983B GSE97681 PCG, lncRNA
EXP0042 Shaffer SM. Nature. 2017 (WM989) Melanoma 36 Cell Line: WM989 GSE97681 PCG, lncRNA
EXP0043 Karlsson J. J Mol Biol. 2017 (MLS 1765-92) Myxoid liposarcoma 96 Cell Line: MLS 1765-92 E-MTAB-6142 PCG, lncRNA
EXP0044 Hou Y. Cell Res. 2016 (Liver) Hepatocellular carcinoma 26 Tissue: Liver GSE65364 PCG, lncRNA
EXP0045 Lynn Quek.2016 (Bone marrow) Acute myeloid leukemia 24 Tissue: Bone marrow E-MTAB-2672 PCG, lncRNA
EXP0046 Ebinger S. Cancer Cell. 2016 (PDX) Acute lymphoblastic leukemia 172 PDX GSE83142 PCG
EXP0047 Fan J. Genome Res. 2018 (Bone marrow_10X) Acute myeloid leukemia 1139 Tissue: Bone marrow GSE110499 PCG
EXP0048 Fan J. Genome Res. 2018 (Bone marrow_Smart) Acute myeloid leukemia 165 Tissue: Bone marrow GSE110499 PCG
EXP0049 Li S. Nat Med. 2016 (Bone marrow) Acute myeloid leukemia 96 Tissue: Bone marrow GSE83533 PCG
EXP0050 Giustacchini A. Nat Med. 2017 (Bone marrow) Chronic myelogenous leukemia 1877 Tissue: Bone marrow GSE76312 PCG, lncRNA
EXP0051 Li H. Nat Genet. 2017 (Colon) Colorectal cancer 290 Tissue: Colon GSE81861 PCG, lncRNA
EXP0052 Braune EB. Stem Cell Reports. 2016 (PDX) Breast cancer 369 PDX GSE77308 PCG, lncRNA
EXP0053 Chung W. Nat Commun. 2017 (Breast) Breast cancer 317 Tissue: Breast GSE75688 PCG, lncRNA
EXP0054 Jordan NV. Nature. 2016 (CTC) Breast cancer 70 CTC GSE75367 PCG, lncRNA
EXP0055 Aceto N. Mol Cancer Res. 2018 (CTC) Breast cancer 32 CTC GSE86978 PCG
EXP0056 Venteicher AS. Science. 2017 (Brain) Astrocytoma 5097 Tissue: Brain GSE89567 PCG
EXP0057 Darmanis S. Cell Rep. 2017 (Brain) Glioblastoma 991 Tissue: Brain GSE84465 PCG, lncRNA
EXP0058 Patel AP. Science. 2014 (Brain) Glioblastoma 623 Tissue: Brain GSE57872 PCG, lncRNA
EXP0059 Filbin MG.Science. 2018 (Brain) Glioma 2259 Tissue: Brain GSE102130 PCG
EXP0060 Filbin MG.Science. 2018 (PDX) Glioma 167 PDX GSE102130 PCG
EXP0061 Yuan J. bioRxiv. 2018 (Brain) High-grade glioma 2772 Tissue: Brain GSE103224 PCG, lncRNA
EXP0062 Tirosh I. Nature. 2016 (Brain) Oligodendroglioma 4043 Tissue: Brain GSE70630 PCG
EXP0063 Puram SV. Cell. 2017 (Oral Cavity) Head and neck cancer 2105 Tissue: Oral Cavity and lymph node GSE103322 PCG
EXP0064 Kim KT. Genome Biol. 2016 (PDX) Renal cell carcinoma 83 PDX GSE73121 PCG, lncRNA
EXP0065 Kim KT. Genome Biol. 2016 (Kidney) Renal cell carcinoma 35 Tissue: Kidney GSE73121 PCG, lncRNA
EXP0066 Kim KT. Genome Biol. 2015 (PDX) Lung adenocarcinoma 126 PDX GSE69405 PCG, lncRNA
EXP0067 Guillaumet-Adkins A. Genome Biol. 2017 (PDX_LUAD) Lung adenocarcinoma 42 PDX GSE85534 PCG
EXP0068 Lambrechts D. Nat Med. 2018 (Lung) Non-small cell lung cancer 3524 Tissue: Lung E-MTAB-6149 PCG, lncRNA
EXP0069 Guillaumet-Adkins A. Genome Biol. 2017 (PDX_OV) Ovarian carcinoma 244 PDX GSE85534 PCG
EXP0070 Miyamoto DT. Science. 2015 (CTC) Prostate cancer 117 CTC GSE67980 PCG
EXP0071 Tirosh I. Science. 2016 (Skin) Melanoma 1257 Tissue: Skin GSE72056 PCG
EXP0072 Gerber T. Oncotarget. 2017 (Skin) Melanoma 307 Tissue: Skin GSE81383 PCG, lncRNA
EXP0073 Liu H. PNAS. 2020 (Organoid) Retinoblastoma 9345 Organoid: RB GSE136929 PCG,
EXP0074 Durante MA. Nat Commun. 2020 (Eye) Uveal melanoma 42230 Tissue: Eye GSE139829 PCG, lncRNA
Download for signature profiles
Signature Description No. genes Source Download
AngiogenesisAngiogenesis ensures that cancer cells receive continuous supplies of oxygen and other nutrients.7315614775,GO,MsigDB
ApoptosisThe inactivation of apoptosis in cancer cells lead to the persistence of such grossly abnormal cells in the tissues.6617621274,GO,MsigDB
Cell CycleCell cycle,a critical process to ensure correct cell division,lies at the heart of cancer.13728102192,27124452,29472726,27806376,cyclebase
DifferentiationThe degree of cell differentiation can be used to measure the progress of cancer,and dedifferentiated cells can lead to the formation of cancer.20126771357,GO,MsigDB
DNA damageDNA damage is an alteration in the chemical structure of DNA,and un-repaired DNA damages accumulate in replicating cells possibly contribute to progression to cancer110GO,MsigDB
DNA repairDNA repair plays a fundamental role in the maintenance of genomic integrity,it's deficits may lead to carcinogenesis.119GO,MsigDB
EMTEMT has been indicated to be involved in the initiation of metastasis in cancer progression and in acquiring drug resistance.9026771357,20713713,GO,MsigDB
HypoxiaTumor-hypoxia contributes to cell mobility,metastasis and therapy resistance.8326771357,15374877,MsigDB
InflammationChronic inflammation can cause about 15% to 25% of human cancers.112GO,MsigDB
InvasionInvasion is a critical carcinogenic event in which cancer cells escape from their primary sites and spread to blood or lymphatic vessels.97MsigDB
MetastasisMetastasis promotes the malignant transformation of cancer and causes most cancer deaths.16626771357,HCMDB
ProliferationProliferation,as one of the cancer hallmarks,is responsible for tumor progression.8826771357,GO,MsigDB
QuiescenceQuiescent cancer cells are resistant to chemotherapy.6617717066,MsigDB
StemnessCancer cells with high stemness fuel the growth of cancer.16627806376,26771357,StemMapper